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Chip Gerfen
D1-D2
GPe
GENSATcreBrains
Hooks_IT_PT_cases
Layer 5 IT, PL56
Layer 5 PT, KJ18
Layer 6, GN220
registered brains
registered GN220 CT
registered KJ18 PT
registered PL56 IT
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Inacio et al 2024 Nature Images
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Collection: GENSATcreBrains
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Sepw1_NP39_AAV:2x:SSp/MOp_MH2008
Sepw1_NP39: Layer 2/3 IT
AAV: SSp (EGFP)
AAV: MOp (dTomato)
Layer 2/3
Sepw1_NP39
a_ctx_MOp_primary motor cortex
a_ctx_SSp_primary somatosensory cortex
Sepw1_NP39_AAV:cortex(MOp)_1818
layer 2/3
AAVtracer: cortex (MOp)
cortico-cortical and -striatal labeled
1in5 brain series
Cerebral Cortex
Layer 2/3
Sepw1_NP39
corticostriatal
Sepw1_NP39_AAV:cortex(MOp)_4373
Layer 2/3
AAVtracer: cortex (MO)
cortico-cortical and -striatal
Cerebral Cortex
Layer 2/3
Sepw1_NP39
a_ctx_MOp_primary motor cortex
corticostriatal
Sepw1_NP39_AAV:cortex(MOp)_4736
layer 2/3
AAVtracer: motor cortex (MOp)
cortico-cortical and -striatal labeled
Layer 2/3
Layers (2/3/5a/5b/6)
Sepw1_NP39
a_ctx_MOp_primary motor cortex
corticostriatal
Sepw1_NP39_AAV:cortex(MOp)_4816
lyare 2/3
AAVtracer: cortex (MOp)
Cerebral Cortex
Layer 2/3
Sepw1_NP39
a_ctx_MOp_primary motor cortex
corticostriatal
Sepw1_NP39_AAV:cortex(PL)_1814
Layer 2/3
AAVtracer: cortex (PL)
cortico-cortical and -striatal
Layer 2/3
Layer 5_IT
Sepw1_NP39
a_ctx_prefrontal cortex
corticostriatal
Sepw1_NP39_AAV:cortex(SSp)_0595
layer 2/3
AAVtracer: Cortex (SSp)
cortico-cortical and cortico-striatal
Cerebral Cortex
Layer 2/3
Sepw1_NP39
a_ctx_SSp_primary somatosensory cortex
Sepw1_NP39_AAV:cortex(SSp)_4447
Layer 2/3
AAVtracer: cortex (SSp)
Cerebral Cortex
Layer 2/3
Sepw1_NP39
Sepw1_NP39_AAV(SSp)_0565
Layer 2/3
AAVtracer (SSp)
projects to MOp and secondary SS cortex
Layer 2/3
Sepw1_NP39
a_ctx_SSp_primary somatosensory cortex
Sepw1_NP39_AAV(SSp/MOp)_0089
Layer 2/3
AAVtracer (SSp some MOp)
Layer 2/3
Sepw1_NP39
a_ctx_MOp_primary motor cortex
a_ctx_SSp_primary somatosensory cortex
Sepw1_NP39_reporter_5164
Cre reporter
cortical layer 2/3
02_Cre_withReporter
Cerebral Cortex
Layer 2/3
Sepw1_NP39
Sepw1_NP67_AAV:striatum_2105
striatum:patches
AAVtracer: striatum
TH:yellow
Sepw1_NP67
patches
striatum
Sepw1_NP67_AAV:striatum_2106
striatal patches
AAVtracer: striatum
TH: yellow
Sepw1_NP67_CreReporter_1376
Cre reporter
patch selective line
02_Cre_withReporter
Sepw1_NP67
patches
striatum
Sepw1_NP67_reporter_1371
cre reporter
striatum: patches
02_Cre_withReporter
Sepw1_NP67
patches
striatum
Sepw1_NP67_reporter_1376
Cre reporter
striatum: patches
02_Cre_withReporter
Sepw1_NP67
patches
striatum
Sim1_KJ18_AAV:cortex (MOp)_ 3168
Layer 5: PT corticostriatal
AAVtracer: cortex (MOp)
Layer 5_PT
Sim1_KJ18
a_ctx_MOp_primary motor cortex
corticostriatal
Sim1_KJ18_AAV:cortex (MOp)_ 3969
Layer 5: PT corticostriatal
AAVtracer: cortex (SSp)
Layer 5_PT
Sim1_KJ18
a_ctx_SSp_primary somatosensory cortex
corticostriatal
Sim1_KJ18_AAV:cortex(MOp)_4567
PT corticostriatal
AAVtracer: cortex (MOp / SSp)
Layer 5_PT
Sim1_KJ18
a_ctx_MOp_primary motor cortex
a_ctx_SSp_primary somatosensory cortex
corticostriatal
Sim1_KJ18_AAV:cortex(MOp)_4570
PT corticostriatal
AAVtracer: cortex (MOp / SSp)
Layer 5_PT
Layers (2/3/5a/5b/6)
Sim1_KJ18
a_ctx_MOp_primary motor cortex
a_ctx_SSp_primary somatosensory cortex
corticostriatal
Sim1_KJ18_AAV:cortex(MOp)_542
PT corticostriatal
AAVtracer: cortex (MOp)
1in5 brain series
Layer 5_PT
Sim1_KJ18
a_ctx_MOp_primary motor cortex
corticostriatal
Sim1_KJ18_AAV:cortex(MOp),cortex(SSp)_537a
PT corticostriatal
Two AAVtracers:
RED: cortex (MOp)
EGFP: cortex (SSp)
Layer 5_PT
Sim1_KJ18
a_ctx_MOp_primary motor cortex
a_ctx_SSp_primary somatosensory cortex
corticostriatal
Sim1_KJ18_AAV:cortex(SSp)_2902
PT corticostriatal
AAVtracer: cortex (SSp)
Layer 5_PT
Sim1_KJ18
a_ctx_SSp_primary somatosensory cortex
corticostriatal
Sim1_KJ18_AAV:cortex(SSp)_2903
PT corticostriatal
AAVtracer: cortex (SSp)
Layer 5_PT
Sim1_KJ18
a_ctx_SSp_primary somatosensory cortex
corticostriatal
Sim1_KJ18_AAV:cortex(SSp)_537b
PT corticostriatal
AAVtracer: cortex (SSp)
1in5 brain series
Layer 5_PT
Sim1_KJ18
a_ctx_SSp_primary somatosensory cortex
corticostriatal
Sim1_KJ18_AAV:cortex(SSp)_9465
PT corticostriatal
AAVtracer: cortex (SSp)
Layer 5_PT
Sim1_KJ18
a_ctx_SSp_primary somatosensory cortex
corticostriatal
Sim1_KJ18_AAV:cortex(SSp)_9515
PT corticostriatal
AAVtracer: cortex (SSp)
Layer 5_PT
Sim1_KJ18
a_ctx_SSp_primary somatosensory cortex
corticostriatal
Sim1_KJ18_AAV:MOp/SSp_MH2014
Sim1_KJ18: Layer 5 PT
AAV: SSp (dTomato)
AAV: MOp (EGFP)
Layer 5_PT
Sim1_KJ18
a_ctx_MOp_primary motor cortex
a_ctx_SSp_primary somatosensory cortex
Syt17_NO14_AAV:cortex(AId)_4631
AAV tracer: prefrontal cortex (AId)
inputs to striatal patches
IT corticostriatal type
Layer 5_IT
Syt17_NO14
a_ctx_prefrontal cortex
corticostriatal
patches
Syt17_NO14_AAV:cortex(AId)_4632
AAVtracer: cortex (AId)
input to striatal patches
IT corrticostriatal neurons
Cerebral Cortex
Layer 5_IT
Syt17_NO14
a_ctx_prefrontal cortex
corticostriatal
patches
Syt17_NO14_AAV:cortex(PL)_0430
corticostriatal
AAVtracer: cortex (MOs,PL,AC)
Cerebral Cortex
Syt17_NO14
a_ctx_prefrontal cortex
corticostriatal
Syt17_NO14_AAV:cortex(PL)_2385
PT/IT corticostriatal
AAVtracer: cortex (PL)
1in5 brain series
Layer 5_PT and IT
Syt17_NO14
a_ctx_prefrontal cortex
corticostriatal
Syt17_NO14_AAV:cortex(PL)_4212
PT/IT corticostriatal
AAVtracer: cortex(PL)
Layer 5_PT and IT
Syt17_NO14
a_ctx_prefrontal cortex
corticostriatal
Syt17_NO14_AAV:cortex(PL)_4213
PT/IT corticostriatal
AAVtracer: cortex (PL)
Layer 5_PT and IT
Syt17_NO14
a_ctx_prefrontal cortex
corticostriatal
Syt17_NO14_AAV:cortex(PL)_4217
PT/IT corticostriatal
AAVtracer: cortex(PL)
Layer 5_PT and IT
Syt17_NO14
a_ctx_prefrontal cortex
corticostriatal
Syt17_NO14_AAV:cortex(SSp)_0435
corticostriatal
AAVtracer:cortex(SSp)
note: retrograde labeling in piriform cortex and thalamus
Cerebral Cortex
Syt17_NO14
a_ctx_SSp_primary somatosensory cortex
corticostriatal
patches
Syt17_NO14_AAV:hippocampus_9465
hippocampus
AAVtracer: ventral CA1
inputs to accumbens, prefrontal cortex
1in5 brain series
Syt17_NO14
a_ctx_hippocampus
accumbens
corticostriatal
Syt17_NO14_AAV:thalamus(IL)_9465
thalamostriatal
AAVtracer: thalamus (IL)
input to striatum and cortex
Syt17_NO14
a_thal_IL_intralaminar
thalamostriatal
thalamus
Syt17_NO14_AAV:VTA_9465
AAVtracer: VTA
labels DA projection to accumbens
and prefrontal cortex
Syt17_NO14
VTA
nigrostriatal
Syt17_NO14_reporter_4607
Cre-reporter
reward circuits
prefrontal cortex
VTA
hippocampus
02_Cre_withReporter
Syt17_NO14
VTA
Tlx3_PL56_AAV:2x_SSp/MOp_MH2019
Tlx3_PL56: Layer 5 IT
AAV: dTomato (SSp)
AAV: EGFP (MOp)
Layer 5_IT
Tlx3_PL56
a_ctx_MOp_primary motor cortex
a_ctx_SSp_primary somatosensory cortex
Tlx3_PL56_AAV:cortex(MOp)_1152
IT corticostriatal
AAVtracer: cortex (MOp)
Layer 5_IT
Layers (2/3/5a/5b/6)
Tlx3_PL56
a_ctx_MOp_primary motor cortex
corticostriatal
Tlx3_PL56_AAV:cortex(MOp)_4258
IT corticostriatal
AAVtracer: cortex (MOp)
1in5 brain series
Layer 5_IT
Tlx3_PL56
a_ctx_MOp_primary motor cortex
corticostriatal
Tlx3_PL56_AAV:cortex(SSp)_1157
IT corticostriatal
AAVtracer: cortex (SSp)
Layer 5_IT
Tlx3_PL56
a_ctx_SSp_primary somatosensory cortex
corticostriatal
Tlx3_PL56_AAV:cortex(SSp)_1216
IT corticostriatal
AAVtracer: cortex (SSp)
1in5 brain series
Layer 5_IT
Tlx3_PL56
a_ctx_SSp_primary somatosensory cortex
corticostriatal
Tlx3_PL56_CreReporter_5577
Layer 5: IT
Cre reporter
02_Cre_withReporter
Layer 5_IT
Tlx3_PL56
Tlx3_PL56_reporter_5242
Cre reporter
IT corticostriatal
neocortex
02_Cre_withReporter
Tlx3_PL56
Vipr2_KH234_AAV:thalamus(VPM)_4701
thalamo-cortical
AAVtracer: thalamus (VPM)
Vipr2_KH234
thalamo-cortical
thalamus
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